Line Drawing System-1

Line Drawing System-1

LDS-1 (Line Drawing System-1) was a calligraphic (vector, rather than raster) display processor and display device created by Evans & Sutherland in 1969. This model was known as the first graphics device with a graphics processing unit. == Features == It was controlled by a variety of host computers. Straight lines were smoothly rendered in real-time animation. General principles of operation were similar to the systems used today: 4x4 transformation matrices, 1x4 vertices. Possible uses included flight simulation (in the product brochure there are screenshots of landing on a carrier), scientific imaging and GIS systems. == History == The first LDS-1 was shipped to the customer (BBN) in August 1969. Only a few of these systems were ever built. One was used by the Los Angeles Times as their first typesetting/layout computer. One went to NASA Ames Research Center for Human Factors Research. Another was bought by the Port Authority of New York to develop a tugboat pilot trainer for navigation in the harbor. The MIT Dynamic Modeling had one, and there was a program for viewing an ongoing game of Maze War.

Photo-consistency

In computer vision, photo-consistency determines whether a given voxel is occupied. A voxel is considered to be photo consistent when its color appears to be similar to all the cameras that can see it. Most voxel coloring or space carving techniques require using photo consistency as a check condition in Image-based modeling and rendering applications. == Usage == 3D Volumetric Reconstruction. Image registration. Multi-view reconstruction.

Information explosion

Information explosion is the rapid increase in the amount of published information or data and the effects of this abundance. As the amount of available data grows, the problem of managing the information becomes more difficult, which can lead to information overload. The Online Oxford English Dictionary indicates use of the phrase in a March 1964 New Statesman article. The New York Times first used the phrase in its editorial content in an article by Walter Sullivan on June 7, 1964, in which he described the phrase as "much discussed". The earliest known use of the phrase was in a speech about television by NBC president Pat Weaver at the Institute of Practitioners of Advertising in London on September 27, 1955. The speech was rebroadcast on radio station WSUI in Iowa City and excerpted in the Daily Iowan newspaper two months later. Many sectors are seeing this rapid increase in the amount of information available such as healthcare, supermarkets, and governments. Another sector that is being affected by this phenomenon is journalism. Such a profession, which in the past was responsible for the dissemination of information, may be suppressed by the overabundance of information today. Techniques to gather knowledge from an overabundance of electronic information (e.g., data fusion may help in data mining) have existed since the 1970s. Another common technique to deal with such amount of information is qualitative research. Such approaches aim to organize the information, synthesizing, categorizing and systematizing in order to be more usable and easier to search. == Growth patterns == The world's technological capacity to store information grew from, optimally compressed, 2.6 exabytes in 1986 to 15.7 in 1993, over 54.5 in 2000, and to 295 exabytes in 2007. The world's technological capacity to receive information through one-way broadcast networks was 432 exabytes of (optimally compressed) information in 1986, 715 (optimally compressed) exabytes in 1993, 1,200 (optimally compressed) exabytes in 2000, and 1,900 in 2007. The world's effective capacity to exchange information through two-way telecommunications networks was 0.281 exabytes of (optimally compressed) information in 1986, 0.471 in 1993, 2.2 in 2000, and 65 (optimally compressed) exabytes in 2007. A new metric that is being used in an attempt to characterize the growth in person-specific information, is the disk storage per person (DSP), which is measured in megabytes/person (where megabytes is 106 bytes and is abbreviated MB). Global DSP (GDSP) is the total rigid disk drive space (in MB) of new units sold in a year divided by the world population in that year. The GDSP metric is a crude measure of how much disk storage could possibly be used to collect person-specific data on the world population. In 1983, one million fixed drives with an estimated total of 90 terabytes were sold worldwide; 30MB drives had the largest market segment. In 1996, 105 million drives, totaling 160,623 terabytes were sold with 1 and 2 gigabyte drives leading the industry. By the year 2000, with 20GB drive leading the industry, rigid drives sold for the year are projected to total 2,829,288 terabytes Rigid disk drive sales to top $34 billion in 1997. According to Latanya Sweeney, there are three trends in data gathering today: Type 1. Expansion of the number of fields being collected, known as the “collect more” trend. Type 2. Replace an existing aggregate data collection with a person-specific one, known as the “collect specifically” trend. Type 3. Gather information by starting a new person-specific data collection, known as the “collect it if you can” trend. == Related terms == Since "information" in electronic media is often used synonymously with "data", the term information explosion is closely related to the concept of data flood (also dubbed data deluge). Sometimes the term information flood is used as well. All of those basically boil down to the ever-increasing amount of electronic data exchanged per time unit. A term that covers the potential negative effects of information explosion is information inflation. The awareness about non-manageable amounts of data grew along with the advent of ever more powerful data processing since the mid-1960s. == Challenges == Even though the abundance of information can be beneficial in several levels, some problems may be of concern such as privacy, legal and ethical guidelines, filtering and data accuracy. Filtering refers to finding useful information in the middle of so much data, which relates to the job of data scientists. A typical example of a necessity of data filtering (data mining) is in healthcare since in the next years is due to have EHRs (Electronic Health Records) of patients available. With so much information available, the doctors will need to be able to identify patterns and select important data for the diagnosis of the patient. On the other hand, according to some experts, having so much public data available makes it difficult to provide data that is actually anonymous. Another point to take into account is the legal and ethical guidelines, which relates to who will be the owner of the data and how frequently he/she is obliged to the release this and for how long. With so many sources of data, another problem will be accuracy of such. An untrusted source may be challenged by others, by ordering a new set of data, causing a repetition in the information. According to Edward Huth, another concern is the accessibility and cost of such information. The accessibility rate could be improved by either reducing the costs or increasing the utility of the information. The reduction of costs according to the author, could be done by associations, which should assess which information was relevant and gather it in a more organized fashion. == Web servers == As of August 2005, there were over 70 million web servers. As of September 2007 there were over 135 million web servers. == Blogs == According to Technorati, the number of blogs doubles about every 6 months with a total of 35.3 million blogs as of April 2006. This is an example of the early stages of logistic growth, where growth is approximately exponential, since blogs are a recent innovation. As the number of blogs approaches the number of possible producers (humans), saturation occurs, growth declines, and the number of blogs eventually stabilizes.

Automated journalism

Automated journalism, also known as algorithmic journalism or robot journalism, is a term that attempts to describe modern technological processes that are now in use in the journalistic profession, such as news articles and videos generated by computer programs. There are four main fields of application for automated journalism, namely automated content production, data mining, news dissemination and content optimization. Through generative artificial intelligence, stories are produced automatically by computers rather than human reporters. In the 2020s, generative pre-trained transformers have enabled the generation of articles, simply by providing prompts. Automated journalism is sometimes seen as an opportunity to free journalists from routine reporting, providing them with more time for complex tasks. It also allows efficiency and cost-cutting, alleviating some financial burden that many news organizations face. However, automated journalism is also perceived as a threat to the authorship and quality of news and a threat to the livelihoods of human journalists. == History == Historically, the process involved an algorithm that scanned large amounts of provided data, selected from an assortment of pre-programmed article structures, ordered key points, and inserted details such as names, places, amounts, rankings, statistics, and other figures. These programs interpret, organize, and present data in human-readable ways. The output can also be customized to fit a certain voice, tone, or style. Early implementations were mainly used for stories based on statistics and numerical figures. Common topics include sports recaps, weather, financial reports, real estate analysis, and earnings reviews. Data science and AI companies such as Automated Insights, Narrative Science, United Robots and Monok develop and provide these algorithms to news outlets. In 2016, early adopters included news providers such as the Associated Press, Forbes, ProPublica, and the Los Angeles Times. StatSheet, an online platform covering college basketball, runs entirely on an automated program. In 2006, Thomson Reuters announced their switch to automation to generate financial news stories on its online news platform. Reuters used a tool called Tracer. An algorithm called Quakebot published a story about a 2014 California earthquake on The Los Angeles Times website within three minutes after the shaking had stopped. The Associated Press began using automation to cover 10,000 minor baseball leagues games annually, using a program from Automated Insights and statistics from MLB Advanced Media. Outside of sports, the Associated Press also uses automation to produce stories on corporate earnings. Since 2014, Associated Press has been publishing quarterly financial stories with help from Automated Insights. In May 2020, Microsoft announced that a number of its MSN contract journalists would be replaced by robot journalism. On 8 September 2020, The Guardian published an article entirely written by the neural network GPT-3, although the published fragments were manually picked by a human editor. Agentic Tribune produces all of its news articles automatically using AI. News broadcasters in Kuwait, Greece, South Korea, India, China and Taiwan have presented news with anchors based on generative AI models, prompting concerns about job losses for human anchors and audience trust in news that has historically been influenced by parasocial relationships with broadcasters, content creators or social media influencers. Algorithmically generated anchors have also been used by allies of ISIS for their broadcasts. In 2023, Google reportedly pitched a tool to news outlets that claimed to "produce news stories" based on input data provided, such as "details of current events". Some news company executives who viewed the pitch described it as "[taking] for granted the effort that went into producing accurate and artful news stories." In February 2024, Google launched a program to pay small publishers to write three articles per day using a beta generative AI model. The program does not require the knowledge or consent of the websites that the publishers are using as sources, nor does it require the published articles to be labeled as being created or assisted by these models. Meta AI, a chatbot based on Llama 3 which summarizes news stories, was noted by The Washington Post to copy sentences from those stories without direct attribution and to potentially further decrease the traffic of online news outlets. == Benefits == === Speed === Robot reporters are built to produce large quantities of information at quicker speeds. The Associated Press announced that their use of automation has increased the volume of earnings reports from customers by more than ten times. With software from Automated Insights and data from other companies, they can produce 150 to 300-word articles in the same time it takes journalists to crunch numbers and prepare information. By automating routine stories and tasks, journalists are promised more time for complex jobs such as investigative reporting and in-depth analysis of events. Francesco Marconi of the Associated Press stated that, through automation, the news agency freed up 20 percent of reporters’ time to focus on higher-impact projects. This has also been stated by a spokesperson at Gannett, who stated "By leveraging AI, we are able to expand coverage and enable our journalists to focus on more in-depth reporting." GBH reports that AI tools help increase the reach of news publishers. Mike Carragi, a product manager at Patch, stated that they were able to increase their reach from 1200 communities to 7000 communities in just a few months without the need for new employees solely through the adoption of generative AI. In fact, many communities are served solely by AI generated content, which creates summaries of existing information within the community. === Cost === Automated journalism is cheaper because more content can be produced within less time. It also lowers labour costs for news organizations. Reduced human input means less expenses on wages or salaries, paid leaves, vacations, and employment insurance. Automation serves as a cost-cutting tool for news outlets struggling with tight budgets but still wish to maintain the scope and quality of their coverage. == Concerns == === Authorship === In an automated story, there is often confusion about who should be credited as the author. Several participants of a study on algorithmic authorship attributed the credit to the programmer; others perceived the news organization as the author, emphasizing the collaborative nature of the work. There is also no way for the reader to verify whether an article was written by a robot or human, which raises issues of transparency although such issues also arise with respect to authorship attribution between human authors too. === Credibility and quality === Concerns about the perceived credibility of automated news is similar to concerns about the perceived credibility of news in general. Critics doubt if algorithms are "fair and accurate, free from subjectivity, error, or attempted influence." Again, these issues about fairness, accuracy, subjectivity, error, and attempts at influence or propaganda has also been present in articles written by humans over thousands of years. A common criticism is that machines do not replace human capabilities such as creativity, humour, and critical-thinking. However, as the technology evolves, the aim is to mimic human characteristics. When the UK's Guardian newspaper used an AI to write an entire article in September 2020, commentators pointed out that the AI still relied on human editorial content. Austin Tanney, the head of AI at Kainos said: "The Guardian got three or four different articles and spliced them together. They also gave it the opening paragraph. It doesn’t belittle what it is. It was written by AI, but there was human editorial on that." The largest single study of readers' evaluations of news articles produced with and without the help of automation exposed 3,135 online news consumers to 24 articles. It found articles that had been automated were significantly less comprehensible, in part because they were considered to contain too many numbers. However, the automated articles were evaluated equally on other criteria including tone, narrative flow, and narrative structure. Beyond human evaluation, there are now numerous algorithmic methods to identify machine written articles although some articles may still contain errors that are obvious for a human to identify, they can at times score better with these automatic identifiers than human-written articles. A 2017 Nieman Reports article by Nicola Bruno discusses whether or not machines will replace journalists and addresses concerns around the concept of automated journalism practices. Ultimately, Bruno came to the conclusion that AI would assist journalist

Upper ontology

In information science, an upper ontology (also known as a top-level ontology, upper model, or foundation ontology) is an ontology (in the sense used in information science) that consists of very general terms (such as "object", "property", "relation") that are common across all domains. An important function of an upper ontology is to support broad semantic interoperability among a large number of domain-specific ontologies by providing a common starting point for the formulation of definitions. Terms in the domain ontology are ranked under the terms in the upper ontology, e.g., the upper ontology classes are superclasses or supersets of all the classes in the domain ontologies. A number of upper ontologies have been proposed, each with its own proponents. Library classification systems predate upper ontology systems. Though library classifications organize and categorize knowledge using general concepts that are the same across all knowledge domains, neither system is a replacement for the other. == Development == Any standard foundational ontology is likely to be contested among different groups, each with its own idea of "what exists". One factor exacerbating the failure to arrive at a common approach has been the lack of open-source applications that would permit the testing of different ontologies in the same computational environment. The differences have thus been debated largely on theoretical grounds, or are merely the result of personal preferences. Foundational ontologies can however be compared on the basis of adoption for the purposes of supporting interoperability across domain ontologies. No particular upper ontology has yet gained widespread acceptance as a de facto standard. Different organizations have attempted to define standards for specific domains. The 'Process Specification Language' (PSL) created by the National Institute of Standards and Technology (NIST) is one example. Another important factor leading to the absence of wide adoption of any existing upper ontology is the complexity. Some upper ontologies—Cyc is often cited as an example in this regard—are very large, ranging up to thousands of elements (classes, relations), with complex interactions among them and with a complexity similar to that of a human natural language, and the learning process can be even longer than for a natural language because of the unfamiliar format and logical rules. The motivation to overcome this learning barrier is largely absent because of the paucity of publicly accessible examples of use. As a result, those building domain ontologies for local applications tend to create the simplest possible domain-specific ontology, not related to any upper ontology. Such domain ontologies may function adequately for the local purpose, but they are very time-consuming to relate accurately to other domain ontologies. To solve this problem, some genuinely top level ontologies have been developed, which are deliberately designed to have minimal overlap with any domain ontologies. Examples are Basic Formal Ontology and the DOLCE (see below). === Arguments for the infeasibility of an upper ontology === Historically, many attempts in many societies have been made to impose or define a single set of concepts as more primal, basic, foundational, authoritative, true or rational than all others. A common objection to such attempts points out that humans lack the sort of transcendent perspective — or God's eye view — that would be required to achieve this goal. Humans are bound by language or culture, and so lack the sort of objective perspective from which to observe the whole terrain of concepts and derive any one standard. Thomasson, under the headline "1.5 Skepticism about Category Systems", wrote: "category systems, at least as traditionally presented, seem to presuppose that there is a unique true answer to the question of what categories of entity there are – indeed the discovery of this answer is the goal of most such inquiries into ontological categories. [...] But actual category systems offered vary so much that even a short survey of past category systems like that above can undermine the belief that such a unique, true and complete system of categories may be found. Given such a diversity of answers to the question of what the ontological categories are, by what criteria could we possibly choose among them to determine which is uniquely correct?" Another objection is the problem of formulating definitions. Top level ontologies are designed to maximize support for interoperability across a large number of terms. Such ontologies must therefore consist of terms expressing very general concepts, but such concepts are so basic to our understanding that there is no way in which they can be defined, since the very process of definition implies that a less basic (and less well understood) concept is defined in terms of concepts that are more basic and so (ideally) more well understood. Very general concepts can often only be elucidated, for example by means of examples, or paraphrase. There is no self-evident way of dividing the world up into concepts, and certainly no non-controversial one There is no neutral ground that can serve as a means of translating between specialized (or "lower" or "application-specific") ontologies Human language itself is already an arbitrary approximation of just one among many possible conceptual maps. To draw any necessary correlation between English words and any number of intellectual concepts, that we might like to represent in our ontologies, is just asking for trouble. (WordNet, for instance, is successful and useful, precisely because it does not pretend to be a general-purpose upper ontology; rather, it is a tool for semantic / syntactic / linguistic disambiguation, which is richly embedded in the particulars and peculiarities of the English language.) Any hierarchical or topological representation of concepts must begin from some ontological, epistemological, linguistic, cultural, and ultimately pragmatic perspective. Such pragmatism does not allow for the exclusion of politics between persons or groups, indeed it requires they be considered as perhaps more basic primitives than any that are represented. Those who doubt the feasibility of general purpose ontologies are more inclined to ask "what specific purpose do we have in mind for this conceptual map of entities and what practical difference will this ontology make?" This pragmatic philosophical position surrenders all hope of devising the encoded ontology version of "The world is everything that is the case." (Wittgenstein, Tractatus Logico-Philosophicus). Finally, there are objections similar to those against artificial intelligence. Technically, the complex concept acquisition and the social / linguistic interactions of human beings suggest any axiomatic foundation of "most basic" concepts must be cognitive biological or otherwise difficult to characterize since we don't have axioms for such systems. Ethically, any general-purpose ontology could quickly become an actual tyranny by recruiting adherents into a political program designed to propagate it and its funding means, and possibly defend it by violence. Historically, inconsistent and irrational belief systems have proven capable of commanding obedience to the detriment or harm of persons both inside and outside a society that accepts them. How much more harmful would a consistent rational one be, were it to contain even one or two basic assumptions incompatible with human life? === Arguments for the feasibility of an upper ontology === Many of those who doubt the possibility of developing wide agreement on a common upper ontology fall into one of two traps: they assert that there is no possibility of universal agreement on any conceptual scheme; but they argue that a practical common ontology does not need to have universal agreement, it only needs a large enough user community (as is the case for human languages) to make it profitable for developers to use it as a means to general interoperability, and for third-party developer to develop utilities to make it easier to use; and they point out that developers of data schemes find different representations congenial for their local purposes; but they do not demonstrate that these different representations are in fact logically inconsistent. In fact, different representations of assertions about the real world (though not philosophical models), if they accurately reflect the world, must be logically consistent, even if they focus on different aspects of the same physical object or phenomenon. If any two assertions about the real world are logically inconsistent, one or both must be wrong, and that is a topic for experimental investigation, not for ontological representation. In practice, representations of the real world are created as and known to be approximations to the basic reality, and their use is circumscribed by the limits of e

Single particle analysis

Single particle analysis is a group of related computerized image processing techniques used to analyze images from transmission electron microscopy (TEM). These methods were developed to improve and extend the information obtainable from TEM images of particulate samples, typically proteins or other large biological entities such as viruses. Individual images of stained or unstained particles are very noisy, making interpretation difficult. Combining several digitized images of similar particles together gives an image with stronger and more easily interpretable features. An extension of this technique uses single particle methods to build up a three-dimensional reconstruction of the particle. Using cryo-electron microscopy it has become possible to generate reconstructions with sub-nanometer, near-atomic resolution resolution first in the case of highly symmetric viruses, and now in smaller, asymmetric proteins as well. == Techniques == Single particle analysis can be done on both negatively stained and vitreous ice-embedded transmission electron cryomicroscopy (CryoTEM) samples. Single particle analysis methods are, in general, reliant on the sample being homogeneous, although techniques for dealing with conformational heterogeneity are being developed. Images (micrographs) are taken with an electron microscope using charged-coupled device (CCD) detectors coupled to a phosphorescent layer (in the past, they were instead collected on film and digitized using high-quality scanners). The image processing is carried out using specialized software programs, often run on multi-processor computer clusters. Depending on the sample or the desired results, various steps of two- or three-dimensional processing can be done. === Alignment and classification === Biological samples, and especially samples embedded in thin vitreous ice, are highly radiation sensitive, thus only low electron doses can be used to image the sample. This low dose, as well as variations in the metal stain used (if used) means images have high noise relative to the signal given by the particle being observed. By aligning several similar images to each other so they are in register and then averaging them, an image with higher signal-to-noise ratio can be obtained. As the noise is mostly randomly distributed and the underlying image features constant, by averaging the intensity of each pixel over several images only the constant features are reinforced. Typically, the optimal alignment (a translation and an in-plane rotation) to map one image onto another is calculated by cross-correlation. However, a micrograph often contains particles in multiple different orientations and/or conformations, and so to get more representative image averages, a method is required to group similar particle images together into multiple sets. This is normally carried out using one of several data analysis and image classification algorithms, such as multi-variate statistical analysis and hierarchical ascendant classification, or k-means clustering. Often data sets of tens of thousands of particle images are used, and to reach an optimal solution an iterative procedure of alignment and classification is used, whereby strong image averages produced by classification are used as reference images for a subsequent alignment of the whole data set. === Image filtering === Image filtering (band-pass filtering) is often used to reduce the influence of high and/or low spatial frequency information in the images, which can affect the results of the alignment and classification procedures. This is particularly useful in negative stain images. The algorithms make use of fast Fourier transforms (FFT), often employing Gaussian shaped soft-edged masks in reciprocal space to suppress certain frequency ranges. High-pass filters remove low spatial frequencies (such as ramp or gradient effects), leaving the higher frequencies intact. Low-pass filters remove high spatial frequency features and have a blurring effect on fine details. === Contrast transfer function === Due to the nature of image formation in the electron microscope, bright-field TEM images are obtained using significant underfocus. This, along with features inherent in the microscope's lens system, creates blurring of the collected images visible as a point spread function. The combined effects of the imaging conditions are known as the contrast transfer function (CTF), and can be approximated mathematically as a function in reciprocal space. Specialized image processing techniques such as phase flipping and amplitude correction / Wiener filtering can (at least partially) correct for the CTF, and allow high resolution reconstructions. === Three-dimensional reconstruction === Transmission electron microscopy images are projections of the object showing the distribution of density through the object, similar to medical X-rays. By making use of the projection-slice theorem a three-dimensional reconstruction of the object can be generated by combining many images (2D projections) of the object taken from a range of viewing angles. Proteins in vitreous ice ideally adopt a random distribution of orientations (or viewing angles), allowing a fairly isotropic reconstruction if a large number of particle images are used. This contrasts with electron tomography, where the viewing angles are limited due to the geometry of the sample/imaging set up, giving an anisotropic reconstruction. Filtered back projection is a commonly used method of generating 3D reconstructions in single particle analysis, although many alternative algorithms exist. Before a reconstruction can be made, the orientation of the object in each image needs to be estimated. Several methods have been developed to work out the relative Euler angles of each image. Some are based on common lines (common 1D projections and sinograms), others use iterative projection matching algorithms. The latter works by beginning with a simple, low resolution 3D starting model and compares the experimental images to projections of the model and creates a new 3D to bootstrap towards a solution. Methods are also available for making 3D reconstructions of helical samples (such as tobacco mosaic virus), taking advantage of the inherent helical symmetry. Both real space methods (treating sections of the helix as single particles) and reciprocal space methods (using diffraction patterns) can be used for these samples. === Tilt methods === The specimen stage of the microscope can be tilted (typically along a single axis), allowing the single particle technique known as random conical tilt. An area of the specimen is imaged at both zero and at high angle (~60-70 degrees) tilts, or in the case of the related method of orthogonal tilt reconstruction, +45 and −45 degrees. Pairs of particles corresponding to the same object at two different tilts (tilt pairs) are selected, and by following the parameters used in subsequent alignment and classification steps a three-dimensional reconstruction can be generated relatively easily. This is because the viewing angle (defined as three Euler angles) of each particle is known from the tilt geometry. 3D reconstructions from random conical tilt suffer from missing information resulting from a restricted range of orientations. Known as the missing cone (due to the shape in reciprocal space), this causes distortions in the 3D maps. However, the missing cone problem can often be overcome by combining several tilt reconstructions. Tilt methods are best suited to negatively stained samples, and can be used for particles that adsorb to the carbon support film in preferred orientations. The phenomenon known as charging or beam-induced movement makes collecting high-tilt images of samples in vitreous ice challenging. === Map visualization and fitting === Various software programs are available that allow viewing the 3D maps. These often enable the user to manually dock in protein coordinates (structures from X-ray crystallography, NMR, or a computational model such as one found in the AlphaFold Protein Structure Database) of subunits into the electron density. Several programs can also fit subunits computationally; as of the 2020s using these programs tend to produce better accuracy than manual docking because they can perform labor-intensive tasks such as: The scale of SPA-derived maps depends on knowing the pixel size (angstorms per pixel), which is not always accurate. Programs can automatically correct for this difference by using coordinate data or by using knowledge of chemical bonds. Many proteins are made up of several roughly rigid protein domains linked by flexible parts. Pre-existing coordinate data, whether experimental or computational, may not exactly match the inter-domain positioning of the cyro-EM map. Modern programs can automatically "chop" pre-existing coordinate data into individual domains and fit them in individually. For higher-resolution structures, it is pos

Lion algorithm

Lion algorithm (LA) is one among the bio-inspired (or) nature-inspired optimization algorithms (or) that are mainly based on meta-heuristic principles. It was first introduced by B. R. Rajakumar in 2012 in the name, Lion’s Algorithm. It was further extended in 2014 to solve the system identification problem. This version was referred as LA, which has been applied by many researchers for their optimization problems. == Inspiration from lion’s social behaviour == Lions form a social system called a "pride", which consists of 1–3 pair of lions. A pride of lions shares a common area known as territory in which a dominant lion is called as territorial lion. The territorial lion safeguards its territory from outside attackers, especially nomadic lions. This process is called territorial defense. It protects the cubs till they become sexually matured. The maturity period is about 2–4 years. The pride undergoes survival fights to protect its territory and the cubs from nomadic lions. Upon getting defeated by the nomadic lions, the dominating nomadic lion takes the role of territorial lion by killing or driving out the cubs of the pride. The lioness of the pride give birth to cubs though the new territorial lion. When the cubs of the pride mature and considered to be stronger than the territorial lion, they take over the pride. This process is called territorial take-over. If territorial take-over happens, either the old territorial lion, which is considered to be laggard, is driven out or it leaves the pride. The stronger lions and lioness form the new pride and give birth to their own cubs == Terminology == In the LA, the terms that are associated with lion’s social system are mapped to the terminology of optimization problems. Few of such notable terms are related here. Lion: A potential solution to be generated or determined as optimal (or) near-optimal solution of the problem. The lion can be a territorial lion and lioness, cubs and nomadic lions that represent the solution based on the processing steps of the LA. Territorial lion: The strongest solution of the pride that tends to meet the objective function. Nomadic lion: A random solution, sometimes termed as nomad, to facilitate the exploration principle Laggard lion: Poor solutions that are failed in the survival fight. Pride: A pool of potential solutions i.e. a lion, lioness and their cubs, that are potential solutions of the search problem. Fertility evaluation: A process of evaluating whether the territorial lion and lioness are able to provide potential solutions in the future generations i.e. It ensures that the lion or lioness converge at every generation. Survival fight: It is a greedy selection process, which is often carried out between the pride and nomadic lion. == Algorithm == The steps involved in LA are given below: Pride Generation: Generate X m a l e {\displaystyle X^{male}} , X f e m a l e {\displaystyle X^{female}} and X 1 n o m a d {\displaystyle X_{1}^{nomad}} Determine f ( X m a l e ) {\displaystyle f(X^{male})} , f ( X f e m a l e ) {\displaystyle f(X^{female})} , f ( X 1 n o m a d ) {\displaystyle f(X_{1}^{nomad})} Initialize f r e f {\displaystyle f^{ref}} as f ( X m a l e ) {\displaystyle f(X^{male})} and N g {\displaystyle N_{g}} as 0 Memorize X m a l e {\displaystyle X^{male}} and X f e m a l e {\displaystyle X^{female}} Apply Fertility evaluation Process Generation of cubpool by mating Gender clustering: Define X c u b m a l e {\displaystyle X_{cub}^{male}} and X c u b f e m a l e {\displaystyle X_{cub}^{female}} Initialize a g e c u b {\displaystyle age_{cub}} as zero Apply Cub growth function Territorial defense: If X m a l e {\displaystyle X^{male}} (or pride) fails in the survival fight i.e. X 1 n o m a d {\displaystyle X_{1}^{nomad}} defeats the pride, go to step 4, else continue Increase a g e c u b {\displaystyle age_{cub}} by 1 and check whether cub attains maturity i.e., if a g e c u b > a g e m a x {\displaystyle age_{cub}>age_{max}} , go to Step 9, else continue Territorial takeover: If X c u b m a l e {\displaystyle X_{cub}^{male}} and X c u b f e m a l e {\displaystyle X_{cub}^{female}} are found to be closer to optimal solution, update X m a l e {\displaystyle X^{male}} and X f e m a l e {\displaystyle X^{female}} Increment N g {\displaystyle N_{g}} by 1 Repeat from Step 5, if termination criterion is not violated, else return X m a l e {\displaystyle X^{male}} as the near-optimal solution == Variants == The LA has been further taken forward to adopt in different problem areas. According to the characteristics of the problem area, significant amendment has been done in the processes and the models used in the LA. Accordingly, diverse variants have been developed by the researchers. They can be broadly grouped as hybrid LAs and non-hybrid LAs. Hybrid LAs are the LAs that are amended by the principle of other meta-heuristics, whereas the Non-hybrid LAs take any scientific amendment inside its operation that are felt to be essential to attend the respective problem area. == Applications == LA is applied in diverse engineering applications that range from network security, text mining, image processing, electrical systems, data mining and many more. Few of the notable applications are discussed here. Networking applications: In WSN, LA is used to solve the cluster head selection problem by determining optimal cluster head. Route discovery problem in both the VANET and MANET are also addressed by the LA in the literature. It is also used to detect attacks in advanced networking scenarios such as Software-Defined Networks (SDN) Power Systems: LA has attended generation rescheduling problem in a deregulated environment, optimal localization and sizing of FACTS devices for power quality enhancement and load-frequency controlling problem Cloud computing: LA is used in optimal container-resource allocation problem in cloud environment and cloud security